PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74411
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 23727.7 Da    PI: 4.6677
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74411genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-143275245
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              + e ksn +vtfsk r+g++ KA+EL+ L +a++ +i++sst +
  OMO74411 32 QLEKKSNLHVTFSKCRTGLFQKASELCLLSGARIGIIVLSSTPR 75
              6789************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MTDDGKNGKD GNKEPAAGGK RTKGRQRIEI KQLEKKSNLH VTFSKCRTGL FQKASELCLL  60
SGARIGIIVL SSTPRQKPFC FGHPNIDKIL DQYVSETQNP TDVAVDDDDD DQDVETPIAD  120
LSGLEEIDKK FEGSVEMLEM EKKRGKDQME NNGGTFWWEE DIEGMGLEEL EVYVNALEKL  180
KKNVIVRANA LTMASVTETS SALPGFAQGF RGLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-34M-type_MADS family protein