PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74422
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family BBR-BPC
Protein Properties Length: 303aa    MW: 34249 Da    PI: 9.4704
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74422genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3382.5e-10323032301
  GAGA_bind   2 dddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                d + ++e  r k+ yy+                ++++l   +++++ms+ aerda+i+e n+a+sekk+a+a+rd+a+l+rdkalaer+ al+erdn+l+
   OMO74422   2 DGTRQQEngRYKPdYYKgvhppwnmmpqhhmkeQNNAL--SMNKKIMSIFAERDAAIQELNIAISEKKEALAARDEALLERDKALAERDGALMERDNALA 99 
                55544445799999999999999999765553222333..4999******************************************************** PP

  GAGA_bind  83 alllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkes 182
                 l+++en++++       + +g+k ++ +        + + v+   e+ ++alp+++ a+e+ ++ +++  + +k+  +k  +k+kk  e+ +++  +e 
   OMO74422 100 VLQYRENAMNF------PMQRGVKRMHPTY-------HSTDVGEDGEHVTDALPVTTIASEEGKRCSVNGIKDNKVVSSKPPRKVKKVAEDLNRQAVTEV 186
                ******98543......4566777766332.......2344455678899*************************************9999988888888 PP

  GAGA_bind 183 aderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                  +r k+e++s+d++ln +++De+++PvPvCsCtG++rqCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++grKmS+++f+kl+++LaaeG dls p
   OMO74422 187 --KRCKSEWNSQDVGLNLINFDETRMPVPVCSCTGVPRQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGGRKMSGSVFTKLISRLAAEGQDLSIP 284
                ..69************************************************************************************************ PP

  GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                +DLk++WA+HGtn+++ti+
   OMO74422 285 LDLKNYWARHGTNRYITIK 303
                ******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MDGTRQQENG RYKPDYYKGV HPPWNMMPQH HMKEQNNALS MNKKIMSIFA ERDAAIQELN  60
IAISEKKEAL AARDEALLER DKALAERDGA LMERDNALAV LQYRENAMNF PMQRGVKRMH  120
PTYHSTDVGE DGEHVTDALP VTTIASEEGK RCSVNGIKDN KVVSSKPPRK VKKVAEDLNR  180
QAVTEVKRCK SEWNSQDVGL NLINFDETRM PVPVCSCTGV PRQCYKWGNG GWQSSCCTTT  240
LSSYPLPQMP NKRHARVGGR KMSGSVFTKL ISRLAAEGQD LSIPLDLKNY WARHGTNRYI  300
TIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.11e-119BBR-BPC family protein