PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74536

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 580aa MW: 65715.3 Da PI: 5.1357

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74536	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	322	365	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +ErrRR+++N+++ Lr+l+Pk + Kl+ a+iL A+e++k+Lq OMO74536 322 VAERRRRKKLNERLYALRSLVPKiS------KLDRASILGDAIEFVKELQ 365 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 580 aa Download sequence
MDMFQNLMER LRQLVGPKGW DYCVVWKLSD DQRFLEWMDC CCGGAENVEN GGELQFPVTP 60 ALPCRDVMFQ HLKTKSCELL LQLPFCIPVD SGNHAMALIS NQPKWLNFSN NSDSNVLEDT 120 VGTRILIPIS AGLVELFVAK QVCEDQNVID YVTTLCNISL EQGAMMTIVI DDDQKDPINL 180 CQQPVSLGTT METVNLPYDI SVDRIRLSNS PTNSMQQYSY LSENKNKIDM YNVEGSSDVF 240 LSDKVVNPYK SSGDNGLQEM DALNSIVTNN ESMLNQGNDK DSIKQENGRS DSISDCSDQN 300 DDEDDARCQR RAGSKGQSKN LVAERRRRKK LNERLYALRS LVPKISKLDR ASILGDAIEF 360 VKELQNQVKE FQDELEEHSD DDGTKRAGMN GVHKNVQSEI FSQNDFQLDP HMEHEKGPNA 420 FHVGGNNDSV SKQNQEMEIS SDKTQQMEVQ VEVAQIDGNQ FFVKVFSEHK PGGFVRLMEA 480 LDSLGLEVTN ANVNSFRGLV SNVFKVEKKD CEMVQAEDVR ESLLELTRNP SKGVSEMTKA 540 SENNHGIECN YHNQQHHLHN HHLSPHHHHH HHHHHLHHFQ

Sequence ? help Back to Top

Protein Sequence Length: 580 aa Download sequence

MDMFQNLMER LRQLVGPKGW DYCVVWKLSD DQRFLEWMDC CCGGAENVEN GGELQFPVTP  60
ALPCRDVMFQ HLKTKSCELL LQLPFCIPVD SGNHAMALIS NQPKWLNFSN NSDSNVLEDT  120
VGTRILIPIS AGLVELFVAK QVCEDQNVID YVTTLCNISL EQGAMMTIVI DDDQKDPINL  180
CQQPVSLGTT METVNLPYDI SVDRIRLSNS PTNSMQQYSY LSENKNKIDM YNVEGSSDVF  240
LSDKVVNPYK SSGDNGLQEM DALNSIVTNN ESMLNQGNDK DSIKQENGRS DSISDCSDQN  300
DDEDDARCQR RAGSKGQSKN LVAERRRRKK LNERLYALRS LVPKISKLDR ASILGDAIEF  360
VKELQNQVKE FQDELEEHSD DDGTKRAGMN GVHKNVQSEI FSQNDFQLDP HMEHEKGPNA  420
FHVGGNNDSV SKQNQEMEIS SDKTQQMEVQ VEVAQIDGNQ FFVKVFSEHK PGGFVRLMEA  480
LDSLGLEVTN ANVNSFRGLV SNVFKVEKKD CEMVQAEDVR ESLLELTRNP SKGVSEMTKA  540
SENNHGIECN YHNQQHHLHN HHLSPHHHHH HHHHHLHHFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	331	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	1e-136	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO74536