PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74566

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

GeBP

Protein Properties

Length: 388aa MW: 42902.8 Da PI: 5.0765

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74566	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	128.2	3.5e-40	169	265	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 lfqrl++eeDei++L+G++d+++k+g++p d++af++fvkk i+ +v+k ql++KirrLKkK++++ k k+g++ +f+k+h+qk+felskkiWg+ OMO74566 169 LFQRLFTEEDEIAVLKGMLDYADKKGADPCVDMNAFHDFVKKYIHTDVTKAQLMDKIRRLKKKYENNAGKGKKGEDRTFTKPHEQKSFELSKKIWGK 265 79*********************************************************************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MARKRPDPIE EPPAASSSDE EEEEEEKKRE DSSEDEEEGS SSEEGSSEEE EDDVPATQPP 60 KKPETPAPAT AAADDSDDES GSESESESDS DSPTPIVKPI ATKPMEDASN AKKPRSKTLA 120 SPVKASAAKR PSESEGLKDN KRAKKKASEE GNTSTLAVEV KKEDAKKQLF QRLFTEEDEI 180 AVLKGMLDYA DKKGADPCVD MNAFHDFVKK YIHTDVTKAQ LMDKIRRLKK KYENNAGKGK 240 KGEDRTFTKP HEQKSFELSK KIWGKDGISG KVESSAAKSN GKATLKELAL SDKKTSDKKK 300 VDVAKPMEVD KEGSKSGVCL FDKRYGVASL EGEVLKHGLE MIGGEKRAAL EEKWKKIHIA 360 ELELFLQRSE LITEQAKLLL EHYKSEDK

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MARKRPDPIE EPPAASSSDE EEEEEEKKRE DSSEDEEEGS SSEEGSSEEE EDDVPATQPP  60
KKPETPAPAT AAADDSDDES GSESESESDS DSPTPIVKPI ATKPMEDASN AKKPRSKTLA  120
SPVKASAAKR PSESEGLKDN KRAKKKASEE GNTSTLAVEV KKEDAKKQLF QRLFTEEDEI  180
AVLKGMLDYA DKKGADPCVD MNAFHDFVKK YIHTDVTKAQ LMDKIRRLKK KYENNAGKGK  240
KGEDRTFTKP HEQKSFELSK KIWGKDGISG KVESSAAKSN GKATLKELAL SDKKTSDKKK  300
VDVAKPMEVD KEGSKSGVCL FDKRYGVASL EGEVLKHGLE MIGGEKRAAL EEKWKKIHIA  360
ELELFLQRSE LITEQAKLLL EHYKSEDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	4e-41	GeBP family protein

Link Out ? help Back to Top
Ensembl	OMO74566