PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74646

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

STAT

Protein Properties

Length: 600aa MW: 67015.5 Da PI: 4.9246

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74646	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	175.7	7.5e-55	220	338	1	119
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypfleav 101 ldvvl+na+gqp++kd+evvasLlya + ++veksdd+eapLL+s+dG+ef+s drp+kl Grasfklkis+Lsskcdnr f+ikf i k++ y+fle + OMO74646 220 LDVVLSNAFGQPINKDLEVVASLLYAHNQSPVEKSDDEEAPLLASFDGIEFASCDRPSKLSDGRASFKLKISKLSSKCDNRQFCIKFGISKFEGYRFLEDF 320 8************************************************************************************************** PP STAT 102 skpirCisrsrntrsssl 119 s +rCisr+ + ++s+ OMO74646 321 SPAVRCISRNPKLSPTSK 338 ********99887775 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MGDNDIDEKD YILLKDLKVE INAVEEEGFM FCFWVYLFNS NASPSTILKQ VCSETNSTAP 60 LLVLNDKTLT LLPLTCSHNK APDSADTALS TEVPKLLTEV ENPQYKWIHV GYEVSTDFVR 120 LHVNGEIAGE LQLSSLSNKD FVPNFLRRMT LVGTTGDNDL QGYIYHPKVL TSTLSVKDHY 180 VKDPPLQLSI DESSASDIEE DNGFWNIVGG KASCRRIFSL DVVLSNAFGQ PINKDLEVVA 240 SLLYAHNQSP VEKSDDEEAP LLASFDGIEF ASCDRPSKLS DGRASFKLKI SKLSSKCDNR 300 QFCIKFGISK FEGYRFLEDF SPAVRCISRN PKLSPTSKRV RLGEAKISST DPLGEECNSR 360 AWTANQVENG FGSSLEGRPE NIEEVDNSLS DSESTGARDP ALKSVSSRGH SVSDVTIFRY 420 CLGGLTDRSL LLKEIATTAS DDSISGFADQ DFELLRKIAG CRDYMAQENF EKMWCWLYPV 480 AFTLSSHRIN AMWNSTSPKW IEGFITKEEA ELSLRGSRGL QEPGTFILRF PTSRSWPHPD 540 AGNLIVTYVG SDYTIHHRLL SLDNIYGSEI REMNTKVKPL QDMLLAEPEL SRLGRIIRSH

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MGDNDIDEKD YILLKDLKVE INAVEEEGFM FCFWVYLFNS NASPSTILKQ VCSETNSTAP  60
LLVLNDKTLT LLPLTCSHNK APDSADTALS TEVPKLLTEV ENPQYKWIHV GYEVSTDFVR  120
LHVNGEIAGE LQLSSLSNKD FVPNFLRRMT LVGTTGDNDL QGYIYHPKVL TSTLSVKDHY  180
VKDPPLQLSI DESSASDIEE DNGFWNIVGG KASCRRIFSL DVVLSNAFGQ PINKDLEVVA  240
SLLYAHNQSP VEKSDDEEAP LLASFDGIEF ASCDRPSKLS DGRASFKLKI SKLSSKCDNR  300
QFCIKFGISK FEGYRFLEDF SPAVRCISRN PKLSPTSKRV RLGEAKISST DPLGEECNSR  360
AWTANQVENG FGSSLEGRPE NIEEVDNSLS DSESTGARDP ALKSVSSRGH SVSDVTIFRY  420
CLGGLTDRSL LLKEIATTAS DDSISGFADQ DFELLRKIAG CRDYMAQENF EKMWCWLYPV  480
AFTLSSHRIN AMWNSTSPKW IEGFITKEEA ELSLRGSRGL QEPGTFILRF PTSRSWPHPD  540
AGNLIVTYVG SDYTIHHRLL SLDNIYGSEI REMNTKVKPL QDMLLAEPEL SRLGRIIRSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-156	STAT family protein

Link Out ? help Back to Top
Ensembl	OMO74646