PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74685

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 293aa MW: 31410.9 Da PI: 6.3814

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74685	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.6	1.9e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl OMO74685 4 QCNVCEAAEAKVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	28.4	3.3e-09	52	95	1	38
zf-B_box 1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 s+++kC+ ++e +fC +++ llC++C +++H H+ OMO74685 52 SQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnayvsgHQ 95 689******99*******************5455666665 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MKIQCNVCEA AEAKVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSSS SSQMPKCDIC 60 QETSGFFFCL QDRALLCRKC DVAIHTANAY VSGHQRFLLT GVKVGPETNG AGASSSDVKS 120 PSSEKTSETK SNSTSRRGTP MPFTSGYNEA LPENVGVGNS GPTKVCYGGG STAGSMQSWQ 180 MDDLFGLTDF NQNYGYMDNG SSKADSGKRG DSDSSSILRS AEEEVDDDEC LGQVPESSWA 240 VPQVPSPPTA SGLYWPKASH NQSDGVVFVP DICLKNTFHS RHSGSIPKRR RQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	2e-95	DBB family protein

Link Out ? help Back to Top
Ensembl	OMO74685