PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74749
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 130aa    MW: 15084 Da    PI: 10.4148
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74749genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY115.77.6e-363010793170
     YABBY  93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
               s+s+ ++kl++  + + +    v+rPP+kr r+Ps yn+fikeeiqrik +nPdi+hreafs+aaknWa fP+ihfgl
  OMO74749  30 SSSRCKNKLPKRATINNTPERVVNRPPDKRHRAPSLYNQFIKEEIQRIKLNNPDITHREAFSTAAKNWARFPHIHFGL 107
               44455556665555554445669*****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    
MAASLHSRPG KDIQVPNYNS SSEYRIDLGS SSRCKNKLPK RATINNTPER VVNRPPDKRH  60
RAPSLYNQFI KEEIQRIKLN NPDITHREAF STAAKNWARF PHIHFGLMLE SENQPKLNDD  120
STEHFHQLLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.17e-46YABBY family protein