PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74817
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 123aa    MW: 13841.7 Da    PI: 9.3714
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74817genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.38.7e-164100195
               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
               f k+l  s v +++++ +p +f+e+     gg+   ++ + + d +g++W++ + y ++ ++     v+++ W +F+ka++L +gD ++F+ + +  ++++
  OMO74817   4 FTKEL--SEVDAKKQMAIPTNFVEHLpshgGGN---TQYIPVVDVDGKVWRFGY-YIRGENSpypkPVFQGEWHQFAKAKKLVAGDQITFRIETDAAGNPR 98 
               78899..99999999********6669984444...34799*************.544444456789************************8877777776 PP

               EE CS
        B3  94 vk 95 
                +
  OMO74817  99 YT 100
               55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    
MASFTKELSE VDAKKQMAIP TNFVEHLPSH GGGNTQYIPV VDVDGKVWRF GYYIRGENSP  60
YPKPVFQGEW HQFAKAKKLV AGDQITFRIE TDAAGNPRYT IAAQKPVSDK LFGHVIRGWG  120
QEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.11e-08RAV family protein