PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74861

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TCP

Protein Properties

Length: 447aa MW: 48299.9 Da PI: 6.9434

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74861	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.7	8.2e-38	35	156	2	121
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa.kskks 100 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el++++ +++ ++ s s+ ++n++ ++a ++a+ + + OMO74861 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELPPWHPETLtTTISTSKPDNNPEDQNATPTANnDKPYQ 135 79**************************************************************4444433322222222222222222222222233333 PP TCP 101 qksaasalnlakesrakarar 121 + + s+ nla+ s r r OMO74861 136 FNIHPSVENLAAGSTGTTRRR 156 333333355555444444443 PP

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence
MGDSHHQAAT SSRLGIRHTG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA VDWLIKKAKP AIDELAELPP WHPETLTTTI STSKPDNNPE 120 DQNATPTANN DKPYQFNIHP SVENLAAGST GTTRRRTATI MGNEVQTLQQ QEMGENPTHT 180 SGFLPPSLVS DEIADTIKSF FPLGASSEAP SSSIQFQNYP PDLLSRTSSQ NQDLRLSLQS 240 FPEPILLHHH HHNQAATAQA HHSEPVLFPG TSPLGGFDGS SAGWEQHHHH PSEIGRFQRL 300 VAWNSSGGGG AADTGSGGGG GTGGGGGGVG GFIFGTPQPQ PLPPAFGQNS QLFSQRGPLQ 360 SSNMPFVRAW IDQPISTTDE HQHHNHHHHQ HHQIPQNIHH QAALSGIGFT TSGVFSGFRI 420 PARIQGEEEE HDSIANKLSS ASSDSHH

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence

MGDSHHQAAT SSRLGIRHTG GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH  60
TAIQFYDVQD RLGYDRPSKA VDWLIKKAKP AIDELAELPP WHPETLTTTI STSKPDNNPE  120
DQNATPTANN DKPYQFNIHP SVENLAAGST GTTRRRTATI MGNEVQTLQQ QEMGENPTHT  180
SGFLPPSLVS DEIADTIKSF FPLGASSEAP SSSIQFQNYP PDLLSRTSSQ NQDLRLSLQS  240
FPEPILLHHH HHNQAATAQA HHSEPVLFPG TSPLGGFDGS SAGWEQHHHH PSEIGRFQRL  300
VAWNSSGGGG AADTGSGGGG GTGGGGGGVG GFIFGTPQPQ PLPPAFGQNS QLFSQRGPLQ  360
SSNMPFVRAW IDQPISTTDE HQHHNHHHHQ HHQIPQNIHH QAALSGIGFT TSGVFSGFRI  420
PARIQGEEEE HDSIANKLSS ASSDSHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	1e-109	TCP family protein

Link Out ? help Back to Top
Ensembl	OMO74861