PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO74904
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HB-other
Protein Properties Length: 152aa    MW: 16746.2 Da    PI: 10.4624
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO74904genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.43.7e-061374655
              S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
  Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
              +f+++++ e+e+  ++  n+ p +e    LA+k            ++ +qV +WFqNrR+  
  OMO74904 13 RFNPTEVAEMETILQEhqNQMPVREILVSLADKFsesaerkgkiVVQFKQVWNWFQNRRYAI 74
              588899999999999655999999999999999999999999888999***********865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MGRPPSNGGP AFRFNPTEVA EMETILQEHQ NQMPVREILV SLADKFSESA ERKGKIVVQF  60
KQVWNWFQNR RYAIRAKSSK VPLPGKLNVT SLPRDDSNPV RTVSQPVAAP MPPPMSASMP  120
AAMPASTVPG VGRPISEHSY MEFEAKSSRD GA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.39e-57HB-other family protein