PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO74913

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HD-ZIP

Protein Properties

Length: 98aa MW: 11733.5 Da PI: 10.5438

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO74913	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.6	2.1e-18	14	67	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++++eq++ Le+ F n+++ e ++ LA++lg++ rqV +W+qN+Ra++k OMO74913 14 NKKRLNQEQVRLLEKSFDANKKLEPELKQYLANQLGVPARQVAIWYQNKRARWK 67 56789************************************************9 PP
2	HD-ZIP_I/II	103	2.4e-33	14	97	2	85
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +k+rl++eqv+lLE+sF++++kLepe K+ la++Lg+ +rqva+W+qn+RAR+kt+ lE dy++L+ ++++ ++e++rLek+v+ OMO74913 14 NKKRLNQEQVRLLEKSFDANKKLEPELKQYLANQLGVPARQVAIWYQNKRARWKTQSLELDYNTLQVKLENAVSEKRRLEKDVK 97 79*******************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence
MDFQTQKLYA SKHNKKRLNQ EQVRLLEKSF DANKKLEPEL KQYLANQLGV PARQVAIWYQ 60 NKRARWKTQS LELDYNTLQV KLENAVSEKR RLEKDVKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	4e-33	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OMO74913