PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75180
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 205aa    MW: 23390.5 Da    PI: 5.4643
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75180genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.76.6e-11693387
              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE..E-SS CS
        B3  3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk..ldgr 87
              k+lt+ d  k+  ++  kk +  + g+k  +++ ++ d++g +W ++++ r k++    vl+kGW  Fv++ +L +gD v+F+  ld+ 
  OMO75180  6 KILTKTDIRKRLSVRTKKKECFLNFGDK-YKVEFKVIDQKGIVWPFECSKREKGKYpkPVLSKGWLAFVREWQLAVGDEVIFHeeLDKA 93
              5665555555544444455554444444.4589***************76555544789***********************9444433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MKKFSKILTK TDIRKRLSVR TKKKECFLNF GDKYKVEFKV IDQKGIVWPF ECSKREKGKY  60
PKPVLSKGWL AFVREWQLAV GDEVIFHEEL DKAGQCFYRI QVIKTTTNQS PVPNHDAFEP  120
TGVASSGDLE EDPSATMNSG VTTDDDPAID DQSEGVRGQP VTGNMVGFMF GFGSEEPGVE  180
VREPQFIDFF EREKERPSPT FIQFF