PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75194
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 118aa    MW: 13389.8 Da    PI: 10.9022
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75194genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3375.9e-125101197
               EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
               f k+lt+ dv k+  l +p k++ ++    g++++ +++ +  d+sg+   +++++ +k+  + v++kGW ++++ n+L++gD v F+  ++ ++++++kv
  OMO75194   5 FSKILTKTDVEKR--LAVPSKHLGSFprfkGHEHAVNFEAI-DDQSGKICVFQCSIrKKNYMKPVISKGWVQYARNNKLRVGDKVKFY--REAGGNYRIKV 100
               7899999999986..9*******999998655555555554.77**********884555555*************************..44677788877 PP

               E CS
        B3  97 f 97 
                
  OMO75194 101 K 101
               5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    
MAVIFSKILT KTDVEKRLAV PSKHLGSFPR FKGHEHAVNF EAIDDQSGKI CVFQCSIRKK  60
NYMKPVISKG WVQYARNNKL RVGDKVKFYR EAGGNYRIKV KKSVKIFGVV IGYAPARG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-09B3 family protein