PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75234
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family B3
Protein Properties Length: 119aa    MW: 13514.4 Da    PI: 8.4887
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75234genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.64.7e-134104196
               EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvv 94 
               f+kvlt+ d  k+  l +p   + +    +g  +  ++l+++d++ r+W+++++   +++  + +l++GW eFv+ +gL  +D++ ++ + ++ s++++++
  OMO75234   4 FEKVLTQTDIEKR--LAVPTASLPQLgfgNGHANHYVDLVVKDSTERVWSFRCSTrlTGNHPKPYLSSGWLEFVQTKGLAINDVLHLYKEeDEaSGAQFRI 102
               7888877776665..7888888877788756667889****************885555555599*********************996523345555555 PP

               EE CS
        B3  95 kv 96 
               kv
  OMO75234 103 KV 104
               55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    
MKLFEKVLTQ TDIEKRLAVP TASLPQLGFG NGHANHYVDL VVKDSTERVW SFRCSTRLTG  60
NHPKPYLSSG WLEFVQTKGL AINDVLHLYK EEDEASGAQF RIKVQRNISL FGQPIWADL