PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75237
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ZF-HD
Protein Properties Length: 238aa    MW: 26873.7 Da    PI: 10.3349
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75237genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer781.3e-243889358
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                  +rYkeC++Nh +  G +a+DGCgEfm+s    ++ +  kCaACgCHRnFHR+e+ 
     OMO75237 38 LCRYKECKRNHGIPFGRYAFDGCGEFMKS----SDEDPYKCAACGCHRNFHRKEPC 89
                 589*************************9....5668****************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MERLERGRDG RLKGKGPIFE PVSLIHRCCS HVRAEAELCR YKECKRNHGI PFGRYAFDGC  60
GEFMKSSDED PYKCAACGCH RNFHRKEPCP ADTPQNNRNN SVTLAPPTQA PTPEKEQFMS  120
PLPLATLNGN TGESSSFPRV DKNLDAGSET QSGVGVGVRA GLGVQKGMKI KRTRTRFTLE  180
QKQKMTRFAV DRLGWRLHRT DETDVLNLCK DLGISRHVFV VWMNNTRRRI RNKRAGTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.18e-37ZF-HD family protein