PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO75240

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 673aa MW: 75674.3 Da PI: 6.6201

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO75240	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.001	408	430	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 C+ Cgk+F + L++H H OMO75240 408 CSyeGCGKTFIDAGALRKHSHIH 430 77779**************7766 PP
2	zf-C2H2	21.9	4.7e-07	435	459	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk Fs nL++H++tH OMO75240 435 YVCHweGCGKAFSLDFNLRSHMKTH 459 9***********************9 PP
3	zf-C2H2	16.5	2.3e-05	465	489	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi++H OMO75240 465 HICPypDCGKRYAHEYKLKNHISSH 489 679999******************6 PP
4	zf-C2H2	12.8	0.00035	529	554	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y Cp C k + + + Lk H+r+ H OMO75240 529 YACPydGCEKAYIHEYKLKLHLRReH 554 89*********************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MAEFDYEELV KATQSFSPSK LIGKGSHGSV YEGNLSENRV VAIKRSSINI GVESQQRDNM 60 KKLDNEISIL SSLRESSNII SFLGSATHGS AKSNDKLLVM ELMPNGSLHD LLHVAATPPP 120 WPKRIEIVMQ IARAVQFLHE GNPLVIHRDI KSANILFDLS WSAKLADFGL AISPAEDSST 180 IQPAGTIGYL DPCYTAPNKL STKNDVFSLG VVLLEIISGR KVIDVSKAPA SIVEWAIPLV 240 EKQRIVEVCD PRVPFPTYNM EGMIRRILSV ASRCLSENEE RRPSIGEIIM EMESYSYSIE 300 RVRSYNITAW TSLLQSLILI TRKRRKLTSR QQWRRAKTHQ AAAGDHIVNS DVSRRKTMVP 360 QDVVATGGKC MILKWVNENT LKALKEKEKE PEAPEPEPEP TTEVLFLCSY EGCGKTFIDA 420 GALRKHSHIH GERQYVCHWE GCGKAFSLDF NLRSHMKTHS QENYHICPYP DCGKRYAHEY 480 KLKNHISSHH EKNATPDAPK YVTPPPEKIT KTPKSTGGAY GSASSDRPYA CPYDGCEKAY 540 IHEYKLKLHL RREHPGHMSD ENVENATANV DNEMDEASDQ DAYAGKRVNG KSQKQQSRAK 600 PNVKMPPAKI ARQKGSSPAA ASLPVPKKQW PVKEEVYEEE DSEETEEDRE NVEDGWRYGE 660 NNEDDDEETE YED

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MAEFDYEELV KATQSFSPSK LIGKGSHGSV YEGNLSENRV VAIKRSSINI GVESQQRDNM  60
KKLDNEISIL SSLRESSNII SFLGSATHGS AKSNDKLLVM ELMPNGSLHD LLHVAATPPP  120
WPKRIEIVMQ IARAVQFLHE GNPLVIHRDI KSANILFDLS WSAKLADFGL AISPAEDSST  180
IQPAGTIGYL DPCYTAPNKL STKNDVFSLG VVLLEIISGR KVIDVSKAPA SIVEWAIPLV  240
EKQRIVEVCD PRVPFPTYNM EGMIRRILSV ASRCLSENEE RRPSIGEIIM EMESYSYSIE  300
RVRSYNITAW TSLLQSLILI TRKRRKLTSR QQWRRAKTHQ AAAGDHIVNS DVSRRKTMVP  360
QDVVATGGKC MILKWVNENT LKALKEKEKE PEAPEPEPEP TTEVLFLCSY EGCGKTFIDA  420
GALRKHSHIH GERQYVCHWE GCGKAFSLDF NLRSHMKTHS QENYHICPYP DCGKRYAHEY  480
KLKNHISSHH EKNATPDAPK YVTPPPEKIT KTPKSTGGAY GSASSDRPYA CPYDGCEKAY  540
IHEYKLKLHL RREHPGHMSD ENVENATANV DNEMDEASDQ DAYAGKRVNG KSQKQQSRAK  600
PNVKMPPAKI ARQKGSSPAA ASLPVPKKQW PVKEEVYEEE DSEETEEDRE NVEDGWRYGE  660
NNEDDDEETE YED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO75240