PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75281
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28661.9 Da    PI: 9.8878
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75281genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.46.1e-212063649
              HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +sn qvtfskRr+g++KKA+EL++LC+ae+a+++fs+  k++ +
  OMO75281 20 DSNLQVTFSKRRAGLFKKASELCTLCGAEIAMVVFSPGRKVFSF 63
              7999*********************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MVKKQSKGRQ KVEMVKMTKD SNLQVTFSKR RAGLFKKASE LCTLCGAEIA MVVFSPGRKV  60
FSFGHPEVEA IIERYLSRNP PQTSGALQLV EAHRNANVRE LNMQLTEVAS QLEVERKRGE  120
ELHVMKNAGQ SQWWWQSPVE ELSLPQLLQL KSAMEELKKN VAKQVDKVIF QSMNSQQQFF  180
MGSPSVGMQA QQLPFETKNN IAFDHGNMIP HQEYTPVAPP PHMMPPPPGF NPNPEGYNPN  240
AHGFINPGFG RGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-63M-type_MADS family protein