PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO75328

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 289aa MW: 32894.7 Da PI: 5.9304

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO75328	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.7	1.3e-05	33	156	19	55
HHHHHHCTSCCC......................................................................................... CS HLH 19 afeeLrellPkas.......................................................................................k 32 +f+eL +lP a + OMO75328 33 SFDELSNMLPLAAatfgenlqlqhsnfsndihsntamdirpnfklqlktnswescksspddhsdiiisnlqqptssnlmmmnnnpnpidtrsylgrkeapR 133 68888888888555888888888888888888888888888888888888888888888888888888888999999999999999999999999999965 PP .TTS-STCHHHHHHHHHHHHHHH CS HLH 33 apskKlsKaeiLekAveYIksLq 55 ++ ++Ka++L A++Y+k+Lq OMO75328 134 KAQPEMDKASVLGDAIKYLKQLQ 156 56666*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MEISSICREL PEVGLMEEDP NNSLLINQWS MNSFDELSNM LPLAAATFGE NLQLQHSNFS 60 NDIHSNTAMD IRPNFKLQLK TNSWESCKSS PDDHSDIIIS NLQQPTSSNL MMMNNNPNPI 120 DTRSYLGRKE APRKAQPEMD KASVLGDAIK YLKQLQEKVK TLEEKTRKRT MESAVVFVKK 180 SQLIAQGDHD FYSDENFNGP FHEPLPEIEA RFCDKSVLIR IHCEKRKGVA EKIVSEIEKN 240 HLTVINSNVL TFGISALDIT IVAQMEMEFC MTVKDLVKKL RLAFKSLLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-39	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO75328