PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75503
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79049.5 Da    PI: 5.8667
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75503genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2060115156
               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ +++t++q++e+e++F+++++p+ ++r+eL ++lgL+  qVk+WFqN+R+++k
  OMO75503  60 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELGRELGLEPLQVKFWFQNKRTQMK 115
               688999***********************************************999 PP
2START225.71.4e-702434631206
               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS
     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 
               ela +a++el+++a+ +ep+W++s     + +n++e++++f+++ +     ++ ea+r+++vv+m++ +lve+l+d+  qW++ +     ka+tl+v+s+g
  OMO75503 243 ELAVAAMEELIRMAQMGEPLWMTSLdgttSVLNEEEYIRTFPRGIGpkptgFKCEASRETAVVIMNHINLVEILMDVH-QWSTVFSgivsKASTLDVLSTG 342
               57899**********************9999************999********************************.********************** PP

               ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHH CS
     START  89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllr 182
                     galq+m+ae+q++splvp R++++vRy++q+ +g+w++vdvS+d+ ++ p+    vR++++pSg+li++++ng+skvtw+ehv++++r +h+l++
  OMO75503 343 vagnynGALQVMTAEFQVPSPLVPtRESYYVRYCKQHAEGTWAVVDVSLDNLRPSPT----VRCRRRPSGCLIQEMPNGYSKVTWIEHVEVDERGVHNLYK 439
               ******************************************************996....**************************************** PP

               HHHHHHHHHHHHHHHHHTXXXXXX CS
     START 183 slvksglaegaktwvatlqrqcek 206
               +lv+sg+a+gak+w atl+rqce+
  OMO75503 440 QLVNSGHAFGAKRWIATLDRQCER 463
               **********************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MFQPNMMEGQ LHPLEMTQNT SESEIARMRD DEFDSTTKSG SENHEGASGD DQDAARPNKK  60
KRYHRHTQHQ IQEMEAFFKE CPHPDDKQRK ELGRELGLEP LQVKFWFQNK RTQMKTQHER  120
QENTQLRTEN EKLRADNMRY REALSTASCP NCGGPTAVGQ MSFDEHHLRL ENARLREEID  180
RISAIAAKYV GKPVVNYPLL SSPMPPRPLE FGAQPGTGEM YGAGDLLRSI SAPSEADKPM  240
IIELAVAAME ELIRMAQMGE PLWMTSLDGT TSVLNEEEYI RTFPRGIGPK PTGFKCEASR  300
ETAVVIMNHI NLVEILMDVH QWSTVFSGIV SKASTLDVLS TGVAGNYNGA LQVMTAEFQV  360
PSPLVPTRES YYVRYCKQHA EGTWAVVDVS LDNLRPSPTV RCRRRPSGCL IQEMPNGYSK  420
VTWIEHVEVD ERGVHNLYKQ LVNSGHAFGA KRWIATLDRQ CERLASVMAT NIPTGDVGVI  480
TNQDGRKSML KLAERMVISF CAGVSASTAH TWTTLSGTGA DDVRVMTRKS VDDPGRPPGI  540
VLSAATSFWL PVSPKRVFDF LRDENSRSEW DILSNGGVVQ EMAHIANGRD TGNCVSLLRS  600
ANSSQSNMLI LQESCTDPTA SFVIYAPVDI VAMNVVLNGG DPDYVALLPS GFAILPDGTA  660
ATAGGIADAG SGGSLLTVAF QILVDSVPTA KLSLGSVATV NNLIACTVER IKASLSCETA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.30.0HD-ZIP family protein