PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO75570

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

DBB

Protein Properties

Length: 196aa MW: 21168.4 Da PI: 4.8394

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO75570	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ +lC +C + H+ H++ OMO75570 4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44 7*****************************65677777776 PP
2	zf-B_box	22.2	2.8e-07	46	89	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41 C++++++++ C + + lC++C +H g H++++ OMO75570 46 LLCERCNSQPAFVRCAEEKISLCQNCDWMGH-GtstsnstHKRQT 89 57*****************************.5578888888776 PP

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC 60 AEEKISLCQN CDWMGHGTST SNSTHKRQTI NCYSGCPSAS ELSSIWSFVL ESPSAGESAC 120 EQELGLMSIT ENTERTSWGP TENTISQNNT GAAEVNDDSN ADKGSGWGGS LSVPELRSAR 180 PPPDQPATST DIPLPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	2e-73	CO-like family protein

Link Out ? help Back to Top
Ensembl	OMO75570