PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO75911

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 558aa MW: 60744.5 Da PI: 5.9639

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO75911	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.8	9.3e-09	371	418	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OMO75911 371 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 418 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence
MEKDKVFMAE GVNRTAAQPS WNSCGFGMEM QTSELNCATE QVGNCFFNPN WENSMDQSDP 60 FESALSSMVS SPAASNAGTN NLPASAGDNV MIRELIGRLG NICNSGDISP QYFIKPINNT 120 NNTSTYSTPL NSPPKLNLSS MMDCQIRGNL NLPNHPSLAM APFSADPGFA ERAARFSCFS 180 SSRNYGGLTE STELSQRLLP RIDSVKRVSS DQSIKVTGSQ LLNAPENNKG SPQDGNDKKN 240 SMLSRSSSPE NAEFGDSKEE SSVSEQIPCV DSSTKVQNDA NSRKRKSIPR GKAKETPSPA 300 AADAKVSADN GESTAKRSKQ DENAKEKTEQ NGNSKAGNDG NQKQNKENSK PPEPPKDYIH 360 VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ 420 VEFLSMKLAT VNPRTDINME ALLSKEMFQS RGSLPQALYS MDSSAAAAAF PFGFQPQQQG 480 LTLPSNIETQ FSMNPLNAAL RKTQGLQLPP LDGFNDANSQ VASFWEDDLQ SIVQMGFGQN 540 QAQSYQGSIA AGQVKIEL

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence

MEKDKVFMAE GVNRTAAQPS WNSCGFGMEM QTSELNCATE QVGNCFFNPN WENSMDQSDP  60
FESALSSMVS SPAASNAGTN NLPASAGDNV MIRELIGRLG NICNSGDISP QYFIKPINNT  120
NNTSTYSTPL NSPPKLNLSS MMDCQIRGNL NLPNHPSLAM APFSADPGFA ERAARFSCFS  180
SSRNYGGLTE STELSQRLLP RIDSVKRVSS DQSIKVTGSQ LLNAPENNKG SPQDGNDKKN  240
SMLSRSSSPE NAEFGDSKEE SSVSEQIPCV DSSTKVQNDA NSRKRKSIPR GKAKETPSPA  300
AADAKVSADN GESTAKRSKQ DENAKEKTEQ NGNSKAGNDG NQKQNKENSK PPEPPKDYIH  360
VRARRGQATD SHSLAERVRR EKISERMKFL QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ  420
VEFLSMKLAT VNPRTDINME ALLSKEMFQS RGSLPQALYS MDSSAAAAAF PFGFQPQQQG  480
LTLPSNIETQ FSMNPLNAAL RKTQGLQLPP LDGFNDANSQ VASFWEDDLQ SIVQMGFGQN  540
QAQSYQGSIA AGQVKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	282	287	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23690.1	8e-73	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO75911