PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO75965
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 335aa    MW: 36555.2 Da    PI: 4.8852
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO75965genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.71e-1398149155
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +r++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YI++Lq
  OMO75965  98 QRMSHITVERNRRKQMNEHLSVLRSLMPCF---YVKRGDQASIIGGVVDYINELQ 149
               79***************************9...9********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MDDNNICDNI FEDSENLAGG DDLFALFESL DGLPEFPPFS PLEETPGGGT ATSARLVSQK  60
STSSSAQQEY SETEPEISPK SKRQKVASSE ETNPDGQQRM SHITVERNRR KQMNEHLSVL  120
RSLMPCFYVK RGDQASIIGG VVDYINELQQ VLQSLEAKKQ RKVYSEVLSP RVVSSPRPSP  180
LSPRKPPLSP RLNLPISPRT PQPGSPYKPS PRLAQQAAPG YLSPTITAST SQLEPSPTSS  240
TSSVDNELVA NSKSPIADVE VKFSGPNLVL KTVSPRIPGQ AVKIIAALEE LSLEILNVNI  300
NTVDETMLNS FTIKIGIECQ LSAEELAHQI QQTFC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199110RMSHITVERNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.12e-91bHLH family protein