PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76278
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 266aa    MW: 29283.3 Da    PI: 8.5802
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76278genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-1279125354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++h+e+ErrRR+riN  +++Lr+llP +     +K++Ka+ L ++++ +k+L
  OMO76278  79 KNHSEAERRRRERINAHLDTLRSLLPFR-----EKMDKATLLGEVIRQVKEL 125
               58*************************9.....8***********9988887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MAAYSLNNNF SSGNCYSGFF DPFSRDLGPC NGNFRGGSLS VAAVPQSLVL DSEKGELVKA  60
PAKVGKKGVS EEKVLAALKN HSEAERRRRE RINAHLDTLR SLLPFREKMD KATLLGEVIR  120
QVKELKKNAV EASKGCLVPM DDDEVKVEPF DDQANGTFLF KASICCDYRP DLLTDIRQAL  180
EALPIKMVKA EISTLGSRLK NDLVFTGSRS AHVDDAEARR FLACSIHQAL NSVLEKASVS  240
PEYSPSLTFP SKRRRISYFD SSSSSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
2252256KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-35bHLH family protein