PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76326

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 363aa MW: 39893.7 Da PI: 8.702

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76326	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106	4.6e-33	78	218	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWkatg 87 lp+G++F+Ptd+e++ ++L++kv ++ ++++ ++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ + +W++tg OMO76326 78 LPAGVKFDPTDQEIL-QHLEAKVISDVrklhplIDEFIPtLEGEnGICYTHPERLP-GVNKDGQIRHFFHRPSKAYTTGTRKRRKVHtdedgsETRWHKTG 176 799*********9.899999887774564432222222333336******.666777788**************744446555788* PP NAM 88 kdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+++vl+ +g+++g kk+Lv+y gr++k+ekt+Wvmh+y+l OMO76326 177 KTRAVLV-DGKVKGFKKILVLYtnYGRQRKPEKTNWVMHQYHL 218 ***.999*******66589************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MTWCNNPDDD RALQLAVTAA AAAAASTKEP TVVSVAAAAA AVSDTTKTHD NIQIINCPSC 60 GHNIPYQDQA GIHDLPGLPA GVKFDPTDQE ILQHLEAKVI SDVRKLHPLI DEFIPTLEGE 120 NGICYTHPER LPGVNKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEDGSET RWHKTGKTRA 180 VLVDGKVKGF KKILVLYTNY GRQRKPEKTN WVMHQYHLGS NEEEKDGELV VSKVFYQTQP 240 RQCGPSNTTT SVGKDDKKLK HGIMNRNHDH HQSSNIIANR SSSSSAAATV AAPAGLVEFY 300 TPPFISFVDH HHHSVHIGSS GHNNIGNREI SPPQLIPNLV VQGDGSSFIR LASDTSKGRL 360 EGK

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MTWCNNPDDD RALQLAVTAA AAAAASTKEP TVVSVAAAAA AVSDTTKTHD NIQIINCPSC  60
GHNIPYQDQA GIHDLPGLPA GVKFDPTDQE ILQHLEAKVI SDVRKLHPLI DEFIPTLEGE  120
NGICYTHPER LPGVNKDGQI RHFFHRPSKA YTTGTRKRRK VHTDEDGSET RWHKTGKTRA  180
VLVDGKVKGF KKILVLYTNY GRQRKPEKTN WVMHQYHLGS NEEEKDGELV VSKVFYQTQP  240
RQCGPSNTTT SVGKDDKKLK HGIMNRNHDH HQSSNIIANR SSSSSAAATV AAPAGLVEFY  300
TPPFISFVDH HHHSVHIGSS GHNNIGNREI SPPQLIPNLV VQGDGSSFIR LASDTSKGRL  360
EGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-120	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO76326