PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76345
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family ERF
Protein Properties Length: 241aa    MW: 27058.2 Da    PI: 4.6615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76345genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.9e-20117167255
       AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
               +y+GVr ++ +g+++AeIrd      k +r++lg+f+taeeAa a+++a+++++g
  OMO76345 117 HYRGVRKRP-WGKYAAEIRDS---SrKGARVWLGTFDTAEEAALAYDKAALRIRG 167
               7********.**********3...2234*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MAVENREHGA GTESILENVW ANFIGGEEAN TATKSSESWE ELPSLDGRDG SMELLERLPS  60
LGRWISMGAD AWENLLDEIF LPSTGDIIEP SINGISNTRQ GPQVKKSVRV EKVATRHYRG  120
VRKRPWGKYA AEIRDSSRKG ARVWLGTFDT AEEAALAYDK AALRIRGPKA YLNFPLETVA  180
KAMDPAFTNN RKRGSRDWEE NNEVVMVEEP TPKRMATVEE YDVVEFQDLG SDYLESLLSS  240
F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.14e-34ERF family protein