PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76376

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

HB-other

Protein Properties

Length: 1663aa MW: 186076 Da PI: 4.9542

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76376	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60	3.8e-19	30	85	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t++qle+Le++++ + yps+++r+ L++klgL++rq ++WF+ rR kekk OMO76376 30 PKRQMKTPYQLEALEKAYALETYPSEATRAALSEKLGLSDRQLQMWFCHRRLKEKK 85 69*****************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1663 aa Download sequence
MEPGSEGENN NQIKGPNKNV NSSNDGSAKP KRQMKTPYQL EALEKAYALE TYPSEATRAA 60 LSEKLGLSDR QLQMWFCHRR LKEKKDTPPK RPRKGPALPP ESPIDDVRAG MEPDYGSGSG 120 SGSSPYMDSR KLGGSSSRGM VEDMPVGRRY YESQQSIMEL RAIACVEAQL GEPLRDDGPM 180 LGMEFDPLPP DAFGAIPEPQ KRSGHPYESK VYDRHDGCSS KAASRVFHEY QFLPEHSSHR 240 SDAYGQVTQS HFHESPVDVA KARAPPFVHG EEPLSRVHGI QGHGSRVRVL PQQDKTAIIP 300 LSSQVADDSL AERESFSNGR INAQSIGHPA LGPEDSYMLS AGQTLNNDAD LRIDRKRKAE 360 KRRQKEELRR EKEAERRKLA MEKATARKIA KESMDLIEDE QLELMELAAA SKGLQSIIHL 420 DHESLQNLDS FRDSLSLFPP KSVQLKRPFA IQPWIDSEEN VGNLLMAWRF LINFADVLRL 480 WPFTLDEFVQ AFHDYDSRLL GEIHIALLKS IIKDIEDVAR TPSTGLGMNQ YYTGNPEGGH 540 PQIVEGAYSW GFDIRNWQRH LNPLTWPEIF RQLAISAGFG PQLKKRSAAW TYMGDNDEGK 600 GCEDVVSTLR NGLAAENAFT LMREKGLLLP RRSRHRLTPG TVKFAAFHVL SLEGSKGLTV 660 LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA PSTYCVRPVY RKDPADAEAI 720 LAAARKKIRQ FENGFLGGED VDEVERDEVE RDDVERDEDS DCEVDEDPEV DDIATPSNAN 780 KDSDYPKDEV NACSASEKVL ASTGDALNVT SEFDKDSSSS PSTTVKDANG TSKTGQYVAR 840 EVIGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE RLNALVTLIG IANEGNSIRA 900 VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE TIIKMDFPPT VGIKTEAQMP NSAVEGSQSP 960 FPAADNKNDE ASPSIPEDQK PLLCSQNVQT DLNSYPAERA LIQEASMGPD NFSTQQHAYA 1020 SKRSRSQLKS YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS DRIFVELHDG 1080 NWRLIDSEEA FDALLTSLDT RGIRESHLRI MLQKIETYFK ENVRRDLRAR ATGRSGSCSE 1140 NEASEIDSSS DFPASFDSPN SAICGPNSDA SETLPSFKIQ LGRNENEKKS ALKRYQDFQR 1200 WMWKECYNSS TLCALKYGKK RCSQLLAVCD ACLCSYIPEV MHCWYCHQTF GSINNSFSFA 1260 EHEIQCKERR KLDTKDQHAL DYSLPPGISL LKSLCALVEV SVPPEALESI WTEGHRKIWG 1320 RKLNASSSVD DLLKVLTHLE SAIKRDYLSS NFETTKELLG LGLHSESDAT TESVLPWIPQ 1380 TIAAVALRLL ELDASIMYVK QEKVEPSENK EARAYIKLPS RTSLPVKNKE LELKEVERDD 1440 PMKEENFADL SNNSRRNNYK RGRGGRELGS GRKLQKRASG SKYDYGKQSA GDNNLSLHLK 1500 PQSQRANGQS SGRGRRTVRK RAERRVTDNT MVARMVDVIK PEAIAVRDLD EGWRSEKMRM 1560 MEMVNPPESN SAEEESDDNA QGEGYEQSNW EVNYNGASNG WNEEPIEASE EEDDAYEDDN 1620 VIEQLGEEDS DEDLELSDAS DIEANNAGND DGSDSAVSDD YSG

Sequence ? help Back to Top

Protein Sequence Length: 1663 aa Download sequence

MEPGSEGENN NQIKGPNKNV NSSNDGSAKP KRQMKTPYQL EALEKAYALE TYPSEATRAA  60
LSEKLGLSDR QLQMWFCHRR LKEKKDTPPK RPRKGPALPP ESPIDDVRAG MEPDYGSGSG  120
SGSSPYMDSR KLGGSSSRGM VEDMPVGRRY YESQQSIMEL RAIACVEAQL GEPLRDDGPM  180
LGMEFDPLPP DAFGAIPEPQ KRSGHPYESK VYDRHDGCSS KAASRVFHEY QFLPEHSSHR  240
SDAYGQVTQS HFHESPVDVA KARAPPFVHG EEPLSRVHGI QGHGSRVRVL PQQDKTAIIP  300
LSSQVADDSL AERESFSNGR INAQSIGHPA LGPEDSYMLS AGQTLNNDAD LRIDRKRKAE  360
KRRQKEELRR EKEAERRKLA MEKATARKIA KESMDLIEDE QLELMELAAA SKGLQSIIHL  420
DHESLQNLDS FRDSLSLFPP KSVQLKRPFA IQPWIDSEEN VGNLLMAWRF LINFADVLRL  480
WPFTLDEFVQ AFHDYDSRLL GEIHIALLKS IIKDIEDVAR TPSTGLGMNQ YYTGNPEGGH  540
PQIVEGAYSW GFDIRNWQRH LNPLTWPEIF RQLAISAGFG PQLKKRSAAW TYMGDNDEGK  600
GCEDVVSTLR NGLAAENAFT LMREKGLLLP RRSRHRLTPG TVKFAAFHVL SLEGSKGLTV  660
LELADKIQKS GLRDLTTSKT PEASISVALT RDAKLFERIA PSTYCVRPVY RKDPADAEAI  720
LAAARKKIRQ FENGFLGGED VDEVERDEVE RDDVERDEDS DCEVDEDPEV DDIATPSNAN  780
KDSDYPKDEV NACSASEKVL ASTGDALNVT SEFDKDSSSS PSTTVKDANG TSKTGQYVAR  840
EVIGTGNPDQ QNIEIDESKS GESWIQGLSE GEYSHLSVEE RLNALVTLIG IANEGNSIRA  900
VLEDRLEAAN ALKKQMWAEA QLDKSRLKEE TIIKMDFPPT VGIKTEAQMP NSAVEGSQSP  960
FPAADNKNDE ASPSIPEDQK PLLCSQNVQT DLNSYPAERA LIQEASMGPD NFSTQQHAYA  1020
SKRSRSQLKS YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS DRIFVELHDG  1080
NWRLIDSEEA FDALLTSLDT RGIRESHLRI MLQKIETYFK ENVRRDLRAR ATGRSGSCSE  1140
NEASEIDSSS DFPASFDSPN SAICGPNSDA SETLPSFKIQ LGRNENEKKS ALKRYQDFQR  1200
WMWKECYNSS TLCALKYGKK RCSQLLAVCD ACLCSYIPEV MHCWYCHQTF GSINNSFSFA  1260
EHEIQCKERR KLDTKDQHAL DYSLPPGISL LKSLCALVEV SVPPEALESI WTEGHRKIWG  1320
RKLNASSSVD DLLKVLTHLE SAIKRDYLSS NFETTKELLG LGLHSESDAT TESVLPWIPQ  1380
TIAAVALRLL ELDASIMYVK QEKVEPSENK EARAYIKLPS RTSLPVKNKE LELKEVERDD  1440
PMKEENFADL SNNSRRNNYK RGRGGRELGS GRKLQKRASG SKYDYGKQSA GDNNLSLHLK  1500
PQSQRANGQS SGRGRRTVRK RAERRVTDNT MVARMVDVIK PEAIAVRDLD EGWRSEKMRM  1560
MEMVNPPESN SAEEESDDNA QGEGYEQSNW EVNYNGASNG WNEEPIEASE EEDDAYEDDN  1620
VIEQLGEEDS DEDLELSDAS DIEANNAGND DGSDSAVSDD YSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKEKKD
2	356	364	KRKAEKRRQ
3	357	365	KRKAEKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	OMO76376