PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76390

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

Protein Properties

Length: 427aa MW: 48817.1 Da PI: 5.4923

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76390	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54	3.1e-17	209	305	2	96
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +k+l++sdv+++gr+vlpk+ ae + ++ +e+++++++d s + W++++++ ++ks++yvl+ ++ +Fv++ngL+ gD+++++ ++++++l++++ OMO76390 209 KKELKNSDVGSLGRIVLPKREAEVNlpTLSDKEGIQVIFKDvYSDQFWSLRYKFwlNNKSRMYVLE-NTGDFVRQNGLEMGDSLTLY--DDESKNLYFSI 305 6899****************999555668899***7788***99899999999.*******************..55888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MENSYTPFVT PTPTTATTTN STSVRPPNVV PWLQSGQNSE YPIYEPMNLD NFRFSTLDSA 60 SASNSNSNPN SQFLHHHQTP NQSLVPFRHP MEQAAGQSLA YPIYGYPFLM GQNNGIEFGV 120 QGSCYMQPSV ERRIPDSYRT KVARIKRKMA RQRSLTLQRN SCPGASSHMD TRRLTSYGGD 180 RSVKNNNNDK RDLYKFFTPD NKKLRVLLKK ELKNSDVGSL GRIVLPKREA EVNLPTLSDK 240 EGIQVIFKDV YSDQFWSLRY KFWLNNKSRM YVLENTGDFV RQNGLEMGDS LTLYDDESKN 300 LYFSITKVGR IAAEPSDPIQ SDNDNSNTNT SNSNSNISNN NNNNNINDMY MPFTCQYKDD 360 EEETSLEILI EQLKQQDNND LMTLPMEPTE DQARHEARSV DDVQFNFDDC YGGLEMLPGF 420 SHYNFSL

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MENSYTPFVT PTPTTATTTN STSVRPPNVV PWLQSGQNSE YPIYEPMNLD NFRFSTLDSA  60
SASNSNSNPN SQFLHHHQTP NQSLVPFRHP MEQAAGQSLA YPIYGYPFLM GQNNGIEFGV  120
QGSCYMQPSV ERRIPDSYRT KVARIKRKMA RQRSLTLQRN SCPGASSHMD TRRLTSYGGD  180
RSVKNNNNDK RDLYKFFTPD NKKLRVLLKK ELKNSDVGSL GRIVLPKREA EVNLPTLSDK  240
EGIQVIFKDV YSDQFWSLRY KFWLNNKSRM YVLENTGDFV RQNGLEMGDS LTLYDDESKN  300
LYFSITKVGR IAAEPSDPIQ SDNDNSNTNT SNSNSNISNN NNNNNINDMY MPFTCQYKDD  360
EEETSLEILI EQLKQQDNND LMTLPMEPTE DQARHEARSV DDVQFNFDDC YGGLEMLPGF  420
SHYNFSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28300.1	2e-54	B3 family protein

Link Out ? help Back to Top
Ensembl	OMO76390