PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76394

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

SBP

Protein Properties

Length: 143aa MW: 16287 Da PI: 8.3819

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76394	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	137.3	4.4e-43	57	133	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C+adl++ak+yhrrhkvCe+h+k+p+v v+g++qrfCqqCsrfhel efDe+krsCrrrLa+hnerrrk+++ OMO76394 57 CQVENCNADLTDAKKYHRRHKVCEFHAKSPMVRVAGIHQRFCQQCSRFHELAEFDETKRSCRRRLAGHNERRRKSSS 133 **************************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence
MATSKADGKR SLKEMTEDEE EEDEDITPLG FSDDIEKKKR GKRGSSAAGG SSALPSCQVE 60 NCNADLTDAK KYHRRHKVCE FHAKSPMVRV AGIHQRFCQQ CSRFHELAEF DETKRSCRRR 120 LAGHNERRRK SSSDYQGDTS NYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	3e-45	SBP family protein

Link Out ? help Back to Top
Ensembl	OMO76394