PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76420
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 206aa    MW: 23545.6 Da    PI: 8.2115
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76420genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.67.2e-32241302103
                   HHHHHHHHHCTG..............GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
  HSF_DNA-bind   2 Flkklyeilede..............elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                   Fl+k+y +le++              + k+++sw+++g+ fvv+ + ef++  Lp++Fkh+nf+SF+RQLn+YgFkk++++          weFkh+
      OMO76420  24 FLSKTYALLEESaeeeaaaaetgdyyDRKKIVSWNAEGTGFVVWSPAEFSELTLPRFFKHNNFSSFIRQLNTYGFKKTSSKI---------WEFKHE 111
                   9*********777888899999999999*************************************************98765.........****** PP

                   XXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  85 sFkkgkkellekikrkkse 103
                   +Fk+g k++l +i rkk+e
      OMO76420 112 KFKRGCKHMLVEITRKKTE 130
                   ****************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MNKTCATSSS CSSLSPRTKG PSPFLSKTYA LLEESAEEEA AAAETGDYYD RKKIVSWNAE  60
GTGFVVWSPA EFSELTLPRF FKHNNFSSFI RQLNTYGFKK TSSKIWEFKH EKFKRGCKHM  120
LVEITRKKTE PSAFPAFLKA SDNDQLNIIG EENSKQTLME ENENLRKEKV ELQAQIAQFK  180
ALEIKLLDCL AQHMDNSSNH NERKLC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-34HSF family protein