PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76424

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

LSD

Protein Properties

Length: 146aa MW: 16234.4 Da PI: 6.3331

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76424	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.6	1.7e-12	56	80	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lLsYPrG + V+C++C t+ OMO76424 56 CGSCRELLSYPRGTRQVKCSCCETI 80 **********************997 PP
2	zf-LSD1	43.7	4.4e-14	94	120	1	25
zf-LSD1 1 Cg..gCrtlLsYPrGApsVRCalCdtV 25 Cg +C lL+YP+GApsVRC++C++V OMO76424 94 CGrdNCAMLLMYPYGAPSVRCSSCQFV 120 78889********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MENKETETQH QPKGEQQVKE EEEEGPPPGW QSIPPPAAKH PPPQQPPSTE MAQMVCGSCR 60 ELLSYPRGTR QVKCSCCETI NFVLEAHQVG LVKCGRDNCA MLLMYPYGAP SVRCSSCQFV 120 TEIGEHNRRP PWSVQQGQPT PPNAVH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	2e-41	LSD family protein

Link Out ? help Back to Top
Ensembl	OMO76424