PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76636

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

NAC

Protein Properties

Length: 318aa MW: 36146.7 Da PI: 5.7198

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76636	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.5	1.3e-19	11	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k......kvkaeekewyfFskrdkkya.......tgkrknra.......... 77 lppGf F+Ptd++++++y ++ +e+ l+ +++ +d+y+ ePw+L k + + k++ +k+++r+ OMO76636 11 LPPGFVFQPTDQQILKYYVRPAIETGYLPN--FMTYCDLYTKEPWNLFdKnfagyfW-----------IYTPLKNKtivcgqhMEKKPRRKkkkkeeince 98 79***********************887..79*********6233333331...........222222221222222111222213445567777 PP NAM 78 .....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + gyW ke+ + +g+l g +k +++ +++ +g++ +Wvmhey+l OMO76636 99 yihrrAGCGYWDGRTAAKEIRDYNGKLLGRQKYFTYNntDAKGLSGNNGKWVMHEYSL 156 77776889************************94334667899*******97 PP

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence
MLPYSDDLGT LPPGFVFQPT DQQILKYYVR PAIETGYLPN FMTYCDLYTK EPWNLFDKNF 60 AGYFWIYTPL KNKTIVCGQH MEKKPRRKKK KKEEINCEYI HRRAGCGYWD GRTAAKEIRD 120 YNGKLLGRQK YFTYNNTDAK GLSGNNGKWV MHEYSLPEAE GLNNAALCKI QCKPSVKPKK 180 RQGKGKTQRM SVNPTPQKKG RVDDHNEETK CNGDPNEFVR TILLENPSPP HVDEIEPQSH 240 QDSLGQVADF TDTNPNDLET FGKPVDWDNL QVIGPMDTVG SDECSCSGGL VCLAGFDELD 300 IIPSGFDDLD IEIESYGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	83	91	KKPRRKKKK
2	83	92	KKPRRKKKKK
3	86	92	RRKKKKK
4	86	93	RRKKKKKE
5	87	93	RKKKKKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-12	NAC family protein

Link Out ? help Back to Top
Ensembl	OMO76636