PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76648
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 227aa    MW: 25718.3 Da    PI: 4.6287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76648genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-124486855
              HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
              +ErrRR+++ +++ +Lr+l+P       + ++Ka+i e A+ YI++Lq
  OMO76648 44 AERRRRQKLSDRLLTLRSLVPII-----TNMNKATIIEDAISYIRELQ 86
              8*********************6.....58*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MEFVGSCMTG LTINDQKIAR GRLGRRKVED DDDNTEFKSP NLHAERRRRQ KLSDRLLTLR  60
SLVPIITNMN KATIIEDAIS YIRELQKTSD LLSEQLLEME GSMSEEGGKP MRNESDAAED  120
MKNCGIKEEV DVTSIDGNRL LIKITFEKKK GCFTKLMEAM NYLGFELTDT NVTTFKGAML  180
FSSCIQGTYG DTLMAEQTKE LLLEIIRGNK DSSDTEFAID ESLWTMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12551RRKVEDDDDNTEFKSPNLHAERRRRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.19e-46bHLH family protein