PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76653
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 325aa    MW: 35863.2 Da    PI: 9.0448
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76653genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.48e-062142511254
               HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  OMO76653 214 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 251
               677888999*******998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MDSSHHHQIQ KDWSPKSYSP GEDSSITNNF KPIDQNFSLN CSGNNYGYPS SATLLQTLFE  60
PDPPHFNNRS INYMSPPTAA TNYGANVVVN ELSSPPPPAS WQKLAPFLRP AAASVPKQPP  120
PSSGLHFSNN TPFWNASTGA TAINDVKSSF LPSPQSQFLA QTFDEKPNCP TLTTKTKNEE  180
VRDSGSVMKK GSVEPPFKRP RIETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV  240
LHEAIEYIKF LHDQVNVLST PYMKQAPASI QQQQQQTDKL KEAEKGPKQD LRSRGLCLVP  300
ISSTFPVANE TTADFWTPTF GGTFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.11e-64bHLH family protein