PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76683
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 247aa    MW: 27576 Da    PI: 6.5335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76683genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.2e-0991137554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               +  rE+ RRdr+N++f eL ++l +    +  K +Ka iL +Av+ + +L
  OMO76683  91 KACREKLRRDRLNDRFMELGSILDPG---RPSKADKAFILVEAVRMVTQL 137
               678**********************7...789*************99988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MVSRQPNGED LVSSENPNNW IFDEYSLLDI QPQLDLPSLE PSATIWSSHS LASSTPPLSV  60
EFNDSFGNSE NPNETGSRKR ARSGSCASGS KACREKLRRD RLNDRFMELG SILDPGRPSK  120
ADKAFILVEA VRMVTQLRDE AQKLKESNET LQEKINELKA EKNELRDEKQ RLKTEKENLE  180
RQVKTMGSQP GFLPHPPAIR TPFSTPGQIV GGKLVPFVGY PGVSMWQFLP PTAVDTSQDH  240
VHRPPVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.15e-88bHLH family protein