PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76808

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

CAMTA

Protein Properties

Length: 887aa MW: 100611 Da PI: 7.4425

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76808	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	159.2	8.1e-50	16	131	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlL 102 +e ++rwl++ e+++iL+n++k+ + +++ p+ s++L++r+ +ryfr+DG++wkkk dgkt++E+hekLKv +vevl+cyYah+e++++fqrrcyw+L OMO76808 16 REgQHRWLRPAEVCEILINHAKFPVLDKPRLMPPARSMFLFDRHALRYFRRDGHNWKKKSDGKTIKEAHEKLKVVSVEVLHCYYAHGEDDEKFQRRCYWML 116 4559*********************************************************************************************** PP CG-1 103 eeelekivlvhylev 117 +e+++k v+vhy++v OMO76808 117 DEDFHKYVFVHYRQV 131 ***********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence
MLSFEFPLHY LNQILREGQH RWLRPAEVCE ILINHAKFPV LDKPRLMPPA RSMFLFDRHA 60 LRYFRRDGHN WKKKSDGKTI KEAHEKLKVV SVEVLHCYYA HGEDDEKFQR RCYWMLDEDF 120 HKYVFVHYRQ VEEGYKYNRS GCSRLPFNVV NGSLPSLVHE NSPAPKVQTY HASTSTTEWN 180 GQTLDYQSTF SPVHPIYGSI PHTASMKHEV AGIHYNMTNS AISMQNQNLY VEQPIAGELI 240 AIIEAGVTLD ELLSDVDVQP VAESPENVIQ NESKLKKLDS FGRWMEAEMG GDCHDSLIAS 300 DHSVNYWNPL DIESDVSEVS SLYPLDPSLV EQLFTIVDFA PNWAYSGVET QVLIIGDFLQ 360 KSKELSNATN WCCMFGEIEV PAEVVGKNVV RCQVPSDHSP GHVPFYITCC NRLACSEIKS 420 FEFREKPPGF LFDRNVKTTA EEEMLLKVRL AILLDIGPRR KWSGCSVKEC DKCRLTNDIY 480 SMGIACPNDW MQPKDGLIQN LLKERLYEWL LYKFHHVGEN LRILDEEGQG VIHLAASLGY 540 NWAIGPIIAA GISINFRDRR GRTGLHWASY FGREGTVITL IQLGANPGAV DDPTSCFPGG 600 RTAADLASSK GHKGIAGFLA ENALLAHFAS LTVVNRNAIE TTATTQVATS NGSLDNKHCS 660 LKMSLAAVRN SAHAAALIQE HFRTRSFRDK QLTKGNDDMS NVSLNRNQKT SDQFGDYLHL 720 HTAAAKIQQK YRGWKGRKEF LNIRNRIVKI QAHVRGHQVR KQYKKLLWSI SIIEKLIRWK 780 RKGAALRLQG FRVQESIDTP VKTGDEYEHL KLGRQQKING VEKALARVQS MARDQEARDQ 840 YMRLTTKFGE SEVSGEGSND STYVDSGQEE NNLLFYSLGD QMIPDPN

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence

MLSFEFPLHY LNQILREGQH RWLRPAEVCE ILINHAKFPV LDKPRLMPPA RSMFLFDRHA  60
LRYFRRDGHN WKKKSDGKTI KEAHEKLKVV SVEVLHCYYA HGEDDEKFQR RCYWMLDEDF  120
HKYVFVHYRQ VEEGYKYNRS GCSRLPFNVV NGSLPSLVHE NSPAPKVQTY HASTSTTEWN  180
GQTLDYQSTF SPVHPIYGSI PHTASMKHEV AGIHYNMTNS AISMQNQNLY VEQPIAGELI  240
AIIEAGVTLD ELLSDVDVQP VAESPENVIQ NESKLKKLDS FGRWMEAEMG GDCHDSLIAS  300
DHSVNYWNPL DIESDVSEVS SLYPLDPSLV EQLFTIVDFA PNWAYSGVET QVLIIGDFLQ  360
KSKELSNATN WCCMFGEIEV PAEVVGKNVV RCQVPSDHSP GHVPFYITCC NRLACSEIKS  420
FEFREKPPGF LFDRNVKTTA EEEMLLKVRL AILLDIGPRR KWSGCSVKEC DKCRLTNDIY  480
SMGIACPNDW MQPKDGLIQN LLKERLYEWL LYKFHHVGEN LRILDEEGQG VIHLAASLGY  540
NWAIGPIIAA GISINFRDRR GRTGLHWASY FGREGTVITL IQLGANPGAV DDPTSCFPGG  600
RTAADLASSK GHKGIAGFLA ENALLAHFAS LTVVNRNAIE TTATTQVATS NGSLDNKHCS  660
LKMSLAAVRN SAHAAALIQE HFRTRSFRDK QLTKGNDDMS NVSLNRNQKT SDQFGDYLHL  720
HTAAAKIQQK YRGWKGRKEF LNIRNRIVKI QAHVRGHQVR KQYKKLLWSI SIIEKLIRWK  780
RKGAALRLQG FRVQESIDTP VKTGDEYEHL KLGRQQKING VEKALARVQS MARDQEARDQ  840
YMRLTTKFGE SEVSGEGSND STYVDSGQEE NNLLFYSLGD QMIPDPN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.3	0.0	CAMTA family protein

Link Out ? help Back to Top
Ensembl	OMO76808