PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76839

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

WRKY

Protein Properties

Length: 574aa MW: 62224.9 Da PI: 7.0318

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76839	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.3e-30	325	383	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ OMO76839 325 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCAEDRTILITTYEGNHNHP 383 7*********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence
MDKGWGLALD SDPGANFFPA KTNPVGPFFR LKPPQQQRDN MFQFPVSLAG SREDRHGGTS 60 SSSSPSEVVD FFSDKKNRVA VDDDHQDNNK TAAVNVKKES STSLGEASDH VNIGLHLLTA 120 NAGSDQSTVD DGVSSDMEDK RAKNELAQLQ VELQRMNAEN QKLRDMLSHV SNNYSALHMH 180 LVTLMQQQRN QAIQEGKSEE KKQDVIVPRQ FLDLGPSGTG TAETDEMSHS SSEERTQSGS 240 PRNNFEIVKT KNENNSQTFD QETSSFRDGK RIGREESPES EGWGPNKVQK LNPSATKPID 300 QSNNEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK 360 QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTSAAAN MLLSGSMPSA DGIMNPNLLA 420 RAILPCSSSM ATISASAPFP TVTLDLTHSP NPLQFQRTPP AQFQVPNFPG QPQNLPQVFG 480 QALYNQSKFS GLQLSQDVGS SQLGHQVPHQ QPQQQPTFAD TLSAATAAIT ADPGFTAALA 540 AAITSIIGGA HPNSSSNTSN NNNSNANTTS TSRQ

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence

MDKGWGLALD SDPGANFFPA KTNPVGPFFR LKPPQQQRDN MFQFPVSLAG SREDRHGGTS  60
SSSSPSEVVD FFSDKKNRVA VDDDHQDNNK TAAVNVKKES STSLGEASDH VNIGLHLLTA  120
NAGSDQSTVD DGVSSDMEDK RAKNELAQLQ VELQRMNAEN QKLRDMLSHV SNNYSALHMH  180
LVTLMQQQRN QAIQEGKSEE KKQDVIVPRQ FLDLGPSGTG TAETDEMSHS SSEERTQSGS  240
PRNNFEIVKT KNENNSQTFD QETSSFRDGK RIGREESPES EGWGPNKVQK LNPSATKPID  300
QSNNEATMRK ARVSVRARSE APMITDGCQW RKYGQKMAKG NPCPRAYYRC TMAVGCPVRK  360
QVQRCAEDRT ILITTYEGNH NHPLPPAAMA MASTTSAAAN MLLSGSMPSA DGIMNPNLLA  420
RAILPCSSSM ATISASAPFP TVTLDLTHSP NPLQFQRTPP AQFQVPNFPG QPQNLPQVFG  480
QALYNQSKFS GLQLSQDVGS SQLGHQVPHQ QPQQQPTFAD TLSAATAAIT ADPGFTAALA  540
AAITSIIGGA HPNSSSNTSN NNNSNANTTS TSRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	1e-149	WRKY family protein

Link Out ? help Back to Top
Ensembl	OMO76839