PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO76898

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 643aa MW: 71892.1 Da PI: 9.2752

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO76898	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28	3.8e-09	276	312	19	55
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ OMO76898 276 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 312 45679*****************************885 PP
2	ELK	40.2	7.3e-14	232	253	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ OMO76898 232 ELKGQLLRKYSGYLGSLKQEFM 253 9********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence
MEGGSNSTCC MMGFGHNSNG LCPMTMMPLM TSHQHHHHHH PHHPNSDSNP LFLPLPPTNN 60 QDHHNHNSSS GSSMILDDNN NNNNGCYVMD TNDGSSSSVK AKIMAHPHYH RLLAAYVNCQ 120 KVGAPPEVVA RLEACASAAT MGSSGTGCLG EDPALDQFME AYCEMLTKYE QELSKPFKEA 180 MLFLQRVECQ FKALTVSSPI SACGEAVERN GSSEEEADVN NNFIDPLAED RELKGQLLRK 240 YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL EWWSRHYKWP YPSESQKLAL AESTGLDQKQ 300 INNWFINQRK RHWKPSEDMQ FVFVDFWNMA LSVSRRIVRS FGSLSALGRC DSSTVVSRSS 360 QASDSISRLS VDYLPHAECF GLPKGGLSSL ACRRFSSTIL TPDSAENAFP SDLLSSKTVL 420 TPDRTIGLYQ DLVIPVTNFH NEDKGLMVLA GDVFDVPIRK DIIHRVVLWQ LAKRQQGTHS 480 TKTISEVSGT GRKPWAQKKT GRARHGTLRG PQFRGGAIMH GPKPRSHAFK LNKKVRRLGL 540 KIVLSARAAE GKLIVFEDLE VPTHKTKNIV NYVKQMEDSK KLLMVDGGPI NEKLKLATQN 600 LHYVNVLPSI GLNVYSILQH DTLVMSRDAV NMIVERMHTP INR

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence

MEGGSNSTCC MMGFGHNSNG LCPMTMMPLM TSHQHHHHHH PHHPNSDSNP LFLPLPPTNN  60
QDHHNHNSSS GSSMILDDNN NNNNGCYVMD TNDGSSSSVK AKIMAHPHYH RLLAAYVNCQ  120
KVGAPPEVVA RLEACASAAT MGSSGTGCLG EDPALDQFME AYCEMLTKYE QELSKPFKEA  180
MLFLQRVECQ FKALTVSSPI SACGEAVERN GSSEEEADVN NNFIDPLAED RELKGQLLRK  240
YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL EWWSRHYKWP YPSESQKLAL AESTGLDQKQ  300
INNWFINQRK RHWKPSEDMQ FVFVDFWNMA LSVSRRIVRS FGSLSALGRC DSSTVVSRSS  360
QASDSISRLS VDYLPHAECF GLPKGGLSSL ACRRFSSTIL TPDSAENAFP SDLLSSKTVL  420
TPDRTIGLYQ DLVIPVTNFH NEDKGLMVLA GDVFDVPIRK DIIHRVVLWQ LAKRQQGTHS  480
TKTISEVSGT GRKPWAQKKT GRARHGTLRG PQFRGGAIMH GPKPRSHAFK LNKKVRRLGL  540
KIVLSARAAE GKLIVFEDLE VPTHKTKNIV NYVKQMEDSK KLLMVDGGPI NEKLKLATQN  600
LHYVNVLPSI GLNVYSILQH DTLVMSRDAV NMIVERMHTP INR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	257	LKQEFMKKRK
2	254	258	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-122	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO76898