PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO76958
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family NF-YB
Protein Properties Length: 233aa    MW: 25666.8 Da    PI: 6.6469
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO76958genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB174.51.1e-5464160197
     NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
               vreqdrf+Pianv+rim+k+lP +akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa+++lGf+dy+epl++yl++yrelege+
  OMO76958  64 VREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGER 160
               69*********************************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MEAGGFHGYR KLPNPNTSTS GSGLLKVGAG ADHERLILSS PSSEVKQLQQ GNSNCENDQN  60
ECTVREQDRF MPIANVIRIM RKILPPHAKI SDDAKETIQE CVSEYISFIT GEANERCQRE  120
QRKTITAEDV LWAMSKLGFD DYIEPLTLYL HRYRELEGER GSIRGEPLVV KRAVVDYGVA  180
AFAPAFHMGH HHAAFFGAAG AATGFLNLKD ASNAPESHPA LANGHGEPYA HHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47670.17e-80NF-YB family protein