PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77632
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family HSF
Protein Properties Length: 361aa    MW: 41248.2 Da    PI: 5.5487
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77632genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.61.3e-35431352103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++++ ++sws+ g sfvv+d+++f++++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++i+
      OMO77632  43 FLTKTFDMVDDPNTNYIVSWSRGGGSFVVWDPHSFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEGFLRGQKHLLKNIR 130
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
      OMO77632 131 RRKTT 135
                   **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MNPYFPVKEE YPSSSYSVSE EDSTTMPPPQ PMEGLHDTGP PPFLTKTFDM VDDPNTNYIV  60
SWSRGGGSFV VWDPHSFSTN LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEGFLR  120
GQKHLLKNIR RRKTTSQPPG SSQQALGPCV EVGRFGVDGE VERLRRDKQV LMMELVKLRQ  180
QQQNTRAYLQ AMEERLQGTE KKQQQMMSFL ARAMQNPSFV QQLMQQKEKR KEIEEAMSKK  240
RRRPIDQGRA GHVVSIGESS RGSGSGGIMN HVKPEPLDFT SDYGYQVTEL EALALEMQGY  300
GRTRKGQEDS QDDKELDAGF WEELLNERFE GELDIPGTEV GEDEDVNVLA DRLGYLGSSP  360
K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229243KRKEIEEAMSKKRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-131HSF family protein