PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77634

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

C2H2

Protein Properties

Length: 410aa MW: 45033.3 Da PI: 8.5671

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77634	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.1e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OMO77634 40 FVCEICNKGFQRDQNLQLHRRGH 62 89*******************88 PP
2	zf-C2H2	12.5	0.00044	116	138	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OMO77634 116 WKCEKCSKIYAVQSDWKAHSKTC 138 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MFPTAMSNST SLSEEASVSS DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR 60 GHNLPWKLKQ RNSKEIKKRA YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK 120 CSKIYAVQSD WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSANQLA 180 AAATANPALH HLTSQANPNP SSLFPFQIQS QSHISLNPWD PTQTSNPNPN NNPLHVKPES 240 HHFSPFFQEQ PPPLPPKTII NSPFQTLHVS SNNPSSNGAT SAAAAAHLSA TALLQKAATV 300 GATATQINNN SNSMAASHHV SPEFMGFAAG NLATWQKTSD RFTRDFLGLT GDHHHHGGGN 360 GNVNVSMNVR DVLTYAGGME LQHFERDHSL LKPHGFGFAE PPASETWGDC

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MFPTAMSNST SLSEEASVSS DPDAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR  60
GHNLPWKLKQ RNSKEIKKRA YVCPEPTCVH HHPSRALGDL TGIKKHYCRK HGEKKWKCEK  120
CSKIYAVQSD WKAHSKTCGT REYRCDCGTL FSRKDSFITH RAFCDALAEE SARLSANQLA  180
AAATANPALH HLTSQANPNP SSLFPFQIQS QSHISLNPWD PTQTSNPNPN NNPLHVKPES  240
HHFSPFFQEQ PPPLPPKTII NSPFQTLHVS SNNPSSNGAT SAAAAAHLSA TALLQKAATV  300
GATATQINNN SNSMAASHHV SPEFMGFAAG NLATWQKTSD RFTRDFLGLT GDHHHHGGGN  360
GNVNVSMNVR DVLTYAGGME LQHFERDHSL LKPHGFGFAE PPASETWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-101	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OMO77634