PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO77738

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 687aa MW: 77170.9 Da PI: 4.8687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO77738	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.9	4.1e-14	471	517	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ OMO77738 471 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 517 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 687 aa Download sequence
MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQL CPQQGILVWA DGYYNGAIKT RKTVQPMEVT 60 AEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG 120 LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGLVQ 180 HVKTFFNDQN PPPPKPALSE HSTSNPATSS DHTRFHSPSI PPMYAACAAD PPPNTNQEED 240 DEEENEDEDE EEEEEEEEEE EHESDSGETG RNSRQVPPQN TQAVAAEPSE LMQLEMSEDI 300 RLGSPDDASN NLDSDFHMLT VSQTGNPAEQ QRRAESFRAE SSRRWQMVQD PMSCSFQQPS 360 SGPATMDELS QEDTHYSQTV STILQNQPTR WAESSSTEYS TQSAFAKWTP RSDHHIHVPV 420 EGTSQWLLKY ILFSVPFLHS KYRDENSPKS RDTEPGSRFR KGTPQDELSA NHVLAERRRR 480 EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QELEARNRQM EVDHHNQRPK 540 SADSLQKTSG SKDQRSGVTV PERARSLGPG PGSDKRKMRI VEGSGGGAKP KTVESLPQPT 600 VETTVEVSII ESDALLELQC AYREGLLLDI MQMLREQLRI EITAVQSSLN NGVFAAELRA 660 KVKDNVNGKK VSIMEVKRAI NQIIPQF

Sequence ? help Back to Top

Protein Sequence Length: 687 aa Download sequence

MAAPPSSRLQ NMLQAAVQSV QWTYSLFWQL CPQQGILVWA DGYYNGAIKT RKTVQPMEVT  60
AEEASLQRSQ QLRELYDSLS AGETNQPARR PCAALSPEDL TESEWFYLMC VSFSFPPGVG  120
LPGKAYARRQ HVWLTGANEV DSKTFSRAIL AKTVLCIPLL DGVVEFGTTE KVQEDLGLVQ  180
HVKTFFNDQN PPPPKPALSE HSTSNPATSS DHTRFHSPSI PPMYAACAAD PPPNTNQEED  240
DEEENEDEDE EEEEEEEEEE EHESDSGETG RNSRQVPPQN TQAVAAEPSE LMQLEMSEDI  300
RLGSPDDASN NLDSDFHMLT VSQTGNPAEQ QRRAESFRAE SSRRWQMVQD PMSCSFQQPS  360
SGPATMDELS QEDTHYSQTV STILQNQPTR WAESSSTEYS TQSAFAKWTP RSDHHIHVPV  420
EGTSQWLLKY ILFSVPFLHS KYRDENSPKS RDTEPGSRFR KGTPQDELSA NHVLAERRRR  480
EKLNERFIIL RSLVPFVTKM DKASILGDTI EYVKQLRKKI QELEARNRQM EVDHHNQRPK  540
SADSLQKTSG SKDQRSGVTV PERARSLGPG PGSDKRKMRI VEGSGGGAKP KTVESLPQPT  600
VETTVEVSII ESDALLELQC AYREGLLLDI MQMLREQLRI EITAVQSSLN NGVFAAELRA  660
KVKDNVNGKK VSIMEVKRAI NQIIPQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	476	481	ERRRRE
2	477	482	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	1e-101	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO77738