PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO77748
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family bHLH
Protein Properties Length: 417aa    MW: 46681.8 Da    PI: 6.3745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO77748genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.00013298339955
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +r+RR ri ++   L+ellP++        + a+ +   +++Ik Lq
  OMO77748 298 DRQRRLRIAESVRALQELLPNS-----AEHDQATAVDDIIDHIKFLQ 339
               7********************6.....58999999999999999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MEKMITAHAW FSSFCLLTAL SYATRLIMLI GISLEILLLV SPDLFQLPTF PVFLLTVCNT  60
WNPVCDFTSG DMDGQQGHKN PSMSLNSRGS ATAYDYDLCY GHVYNPNPVI PMAAGRTNNH  120
SSPLSLSQWI EGPKTPHSYV EFLRENIEKA PSADVLESIG YPVGGIPAID GISEIQRELL  180
HNNAGKANFI SGPNDYPLDQ SEHGKLKLSA THTINPSNHE ASASGRFLRP HDRPSVNRFS  240
SSGFDESHAQ QNHTYLKQEP NEYDCKVFQL QAKENMSAPS FLCQPHHCVP KPKASGSDRQ  300
RRLRIAESVR ALQELLPNSA EHDQATAVDD IIDHIKFLQF QIKELTRSRL GGEPAYPFDY  360
FKGCGHYSLH EQTMNEPLEE MMGKLLEINP LAATQLFERK GLYMMPWTLV DGLHRAT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.12e-20bHLH family protein