PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78162
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family MYB
Protein Properties Length: 295aa    MW: 31415.8 Da    PI: 7.4305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78162genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding346.9e-111054244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     + W+ e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k ++
         OMO78162 10 LEWSREQDKAFENALATYPEDasdRWEKIAADVP-GKTLEEIKKHY 54
                     68********************************.**********9 PP
2Myb_DNA-binding422.1e-13121165347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ +  ++G+g+W++I+r +  +Rt+ q+ s+ qky
         OMO78162 121 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165
                      6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTVDEAGSSL EWSREQDKAF ENALATYPED ASDRWEKIAA DVPGKTLEEI KKHYELLEDD  60
VSRIESGCVP LPSYNSDGSA GHAGDEVTGK KGSGNLGHYN GESNHGSKNS RSDQERRKGI  120
AWTEDEHRLF LLGLDKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRSS  180
IHDITSVGNG DISAPQGPIT GQSNGAATGA SNGKSAKQPP QHPTAAPGVG MYGAPTIGQP  240
IGGPLVSAVG TPVNLPTPAH MAYGVRAPVP GAVVPGAPMN MGPVTYPMPH TSAHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-122MYB family protein