PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78257

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 483aa MW: 54201.9 Da PI: 7.482

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78257	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36	1.3e-11	306	348	8	55
HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+ri++++++Lr l+Pk + ++ a+i+e A+eYI +Lq OMO78257 306 TERNRRKRIKEGLFKLRALVPKiS------NMDRAAIVEDAIEYIGDLQ 348 7*******************66......7**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence
MRGFERAVEW LRPFVDSGNW DFCVVWKLGD DPSRFIEWKA CCCSGGVNVK VEKDELQQQR 60 LGPSCRDVQF QHPIRSKACE ALSHFPFFMS LYAGIHGEVA MSNQPKWVIH GNASGSHGTM 120 GTQVLIPVFG GLIEFFAPKH IPKDQNVIEL VTTQCNAFLE AEVMTAGSYS RANLDKLYSN 180 RVLRKDLQDL PFPISLSTLI PGIQAVPTVL DSSSPLSLDG SSSGSSTGLS IEHHQFPSGF 240 SYVSQDDQLN RLIGSYPGTE RLRCSKNVLE QQAGFVLETR AKSAEAKRKT TEQLEKEHFP 300 SKNLVTERNR RKRIKEGLFK LRALVPKISN MDRAAIVEDA IEYIGDLQEE EKRLRNELRK 360 LEEEDCAMSN NAEMKCAKLD KLHNGNRSAV EQSQVSAILD EKTKEVHIEV NQINKREFLI 420 KLCYVHKRGG FAKLMEGIGS LGLQVIDANV TTFNSKVLNI FKVEDSEIVT MFSRFCLLPT 480 GIS

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence

MRGFERAVEW LRPFVDSGNW DFCVVWKLGD DPSRFIEWKA CCCSGGVNVK VEKDELQQQR  60
LGPSCRDVQF QHPIRSKACE ALSHFPFFMS LYAGIHGEVA MSNQPKWVIH GNASGSHGTM  120
GTQVLIPVFG GLIEFFAPKH IPKDQNVIEL VTTQCNAFLE AEVMTAGSYS RANLDKLYSN  180
RVLRKDLQDL PFPISLSTLI PGIQAVPTVL DSSSPLSLDG SSSGSSTGLS IEHHQFPSGF  240
SYVSQDDQLN RLIGSYPGTE RLRCSKNVLE QQAGFVLETR AKSAEAKRKT TEQLEKEHFP  300
SKNLVTERNR RKRIKEGLFK LRALVPKISN MDRAAIVEDA IEYIGDLQEE EKRLRNELRK  360
LEEEDCAMSN NAEMKCAKLD KLHNGNRSAV EQSQVSAILD EKTKEVHIEV NQINKREFLI  420
KLCYVHKRGG FAKLMEGIGS LGLQVIDANV TTFNSKVLNI FKVEDSEIVT MFSRFCLLPT  480
GIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	3e-53	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO78257