PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78279
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family YABBY
Protein Properties Length: 216aa    MW: 24058.2 Da    PI: 5.3631
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78279genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.16.4e-6861682167
     YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 
               ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas    +lla+ ++ de+ k  l ee+    +++      ++s+s  +ss
  OMO78279   6 QLFDLPEQICYVQCGFCTTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvplHLLASLDQ-DEEPKGALCEEKAAP-RKTAAV--DRRSPSIMTSS 102
               7899***********************************************99777778888887.555555566554443.333333..33344444444 PP

     YABBY  99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                  +++e++ v   p v++PPekrqr+Psaynrfikeei+r+ka+nP+i h+eafs+aaknWahfP++ 
  OMO78279 103 ---DNEEEDVVLMNPTVNKPPEKRQRAPSAYNRFIKEEIRRLKAQNPNIPHKEAFSTAAKNWAHFPPMD 168
               ...3344445555566**************************************************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MSTLNQLFDL PEQICYVQCG FCTTILLVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV  60
PLHLLASLDQ DEEPKGALCE EKAAPRKTAA VDRRSPSIMT SSDNEEEDVV LMNPTVNKPP  120
EKRQRAPSAY NRFIKEEIRR LKAQNPNIPH KEAFSTAAKN WAHFPPMDNI DGESCCGQDE  180
GDASWNSDAA EVHIEGNDFR ERKAARNSIW AKTPFE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.14e-84YABBY family protein