PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78293

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

TALE

Protein Properties

Length: 147aa MW: 17122.2 Da PI: 9.5137

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78293	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.1	8.4e-10	90	124	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yp+++++ LA+ +gL+++q+ +WF N+R ++ OMO78293 90 KWPYPTEADKIALAETTGLDQKQINNWFINQRKRH 124 569*****************************985 PP
2	ELK	28.3	4.1e-10	44	65	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK++Llr +++++++Lk EFs OMO78293 44 DLKDRLLRRFGSHISTLKLEFS 65 69*******************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence
MGQLIMKRLE GSNRPNEGGA SSEEDLSGGE IDGQDAQPRS EDRDLKDRLL RRFGSHISTL 60 KLEFSKKKKK GKLPREARQT LLDWWNVHYK WPYPTEADKI ALAETTGLDQ KQINNWFINQ 120 RKRHWKPSES MQFAVMDNLS GQFFTEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.2	5e-52	TALE family protein

Link Out ? help Back to Top
Ensembl	OMO78293