PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78409

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bZIP

Protein Properties

Length: 386aa MW: 41966.7 Da PI: 6.1455

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78409	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.4	4.1e-15	185	240	3	58
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 ++kr+rr+ +NRe+ArrsR+RK+a + eLe v +L e ++L k+l ++ ++++ OMO78409 185 DVKRARRMRSNRESARRSRRRKQAHMNELEAQVGQLRVEHSTLLKRLTDMNHKYDE 240 78******************************************888877777665 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MNTVFSVDDF SDPFWAASAA EGMSRSQSEW ALEKFLEEFS STGGAIPGSR VGENVIGSSL 60 AASQLSVSKA EEGDRDGDVV EIKRPNNQNH NPPPSDPTPG IPADSDEYRA ILKNKLDQAC 120 AAVALSRGQG EPDCSPCEIS AVATTHKKSG VQVRQTTSGS SREDSDDDEL EGDDIETTEN 180 MDPADVKRAR RMRSNRESAR RSRRRKQAHM NELEAQVGQL RVEHSTLLKR LTDMNHKYDE 240 AAVDNRILKA DIETLRAKVK MAEETVKRVT GINPVLLSRP NVPSVGMPFV SSPLEASTVA 300 PVPMQPNTNQ FFHQPIPSIA APMHHQRVDN SFPGNTLHTP SLDRVQEQIG HSGMQKQIGP 360 GVGPCGPMPG WEPGLSHGAA KNKKQS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MNTVFSVDDF SDPFWAASAA EGMSRSQSEW ALEKFLEEFS STGGAIPGSR VGENVIGSSL  60
AASQLSVSKA EEGDRDGDVV EIKRPNNQNH NPPPSDPTPG IPADSDEYRA ILKNKLDQAC  120
AAVALSRGQG EPDCSPCEIS AVATTHKKSG VQVRQTTSGS SREDSDDDEL EGDDIETTEN  180
MDPADVKRAR RMRSNRESAR RSRRRKQAHM NELEAQVGQL RVEHSTLLKR LTDMNHKYDE  240
AAVDNRILKA DIETLRAKVK MAEETVKRVT GINPVLLSRP NVPSVGMPFV SSPLEASTVA  300
PVPMQPNTNQ FFHQPIPSIA APMHHQRVDN SFPGNTLHTP SLDRVQEQIG HSGMQKQIGP  360
GVGPCGPMPG WEPGLSHGAA KNKKQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	200	207	RRSRRRKQ
2	202	207	SRRRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54620.1	7e-62	bZIP family protein

Link Out ? help Back to Top
Ensembl	OMO78409