PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78428
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family C2H2
Protein Properties Length: 192aa    MW: 21666.5 Da    PI: 5.7149
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78428genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000213557123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              y+C  C++ F++   L  H++ H
  OMO78428 35 YECVFCKRGFTTAQALGGHMNIH 57
              99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    
METNRLEAAV SKSSSEETDD RSEQSNDDLG TGRSYECVFC KRGFTTAQAL GGHMNIHRKD  60
RAKSRPSSVP NLISSPKVDE NSYSSLRSYS YPPIQSYHHH QPHYSIGPEV QVSYHQAFFP  120
AVSGWGFRPP HEIYSNSQHD LNMSPFGDQD CNWPRSLSLR IGPSDHDDEN KKTDGSSQED  180
ELDLELRLGH DP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-14C2H2 family protein