PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OMO78434

Organism

Corchorus capsularis

Taxonomic ID

210143

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Family

bHLH

Protein Properties

Length: 504aa MW: 55109 Da PI: 6.367

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OMO78434	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.8e-13	359	405	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq OMO78434 359 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 405 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence
MGEKFWVNEE DKAMVESVLG TEASEVLISL ASKNLLSDLV SPPPSDLAVQ QRLCQIVDGS 60 NWNYAIFWQV SSLKSGGSIL IWGDGHCRGP KLGGVGGAST SGDGKLEGAE KKNEAKKQVL 120 QKLHACFGGS EEGNYAAKLD GVSNMEMFYL TSMYFSFHCD ASYGPGESYK SSRSIWSSDV 180 NSCSDHYQSR SFLARSAGLQ TVVFVPVKTG VVELGSINRI PEEQNLVEMV STVFGGSSSV 240 QTKAIPKIFG RELSLGGSKS RSISINFSPK VEEESGFTLE SYDVQSLGSS QIYGNSSNGC 300 RSDDGEAKLF PQLLVGGLNS QARISGLDQP KDDSPALPDE RKPRKRGRKP ANGREEPLNH 360 VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV LETEKEMVNN 420 PHKQLPMPDV DFQQRHEDAV VTVRSPLDAH PVSRVLKAFG ENQIAAHDSD VLTDNDKVVH 480 TFTIRAPGAA AEQLKEKLVD AFSK

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence

MGEKFWVNEE DKAMVESVLG TEASEVLISL ASKNLLSDLV SPPPSDLAVQ QRLCQIVDGS  60
NWNYAIFWQV SSLKSGGSIL IWGDGHCRGP KLGGVGGAST SGDGKLEGAE KKNEAKKQVL  120
QKLHACFGGS EEGNYAAKLD GVSNMEMFYL TSMYFSFHCD ASYGPGESYK SSRSIWSSDV  180
NSCSDHYQSR SFLARSAGLQ TVVFVPVKTG VVELGSINRI PEEQNLVEMV STVFGGSSSV  240
QTKAIPKIFG RELSLGGSKS RSISINFSPK VEEESGFTLE SYDVQSLGSS QIYGNSSNGC  300
RSDDGEAKLF PQLLVGGLNS QARISGLDQP KDDSPALPDE RKPRKRGRKP ANGREEPLNH  360
VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV LETEKEMVNN  420
PHKQLPMPDV DFQQRHEDAV VTVRSPLDAH PVSRVLKAFG ENQIAAHDSD VLTDNDKVVH  480
TFTIRAPGAA AEQLKEKLVD AFSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	349	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-180	bHLH family protein

Link Out ? help Back to Top
Ensembl	OMO78434