PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMO78449
Organism
Corchorus capsularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus
Family LBD
Protein Properties Length: 218aa    MW: 23767.8 Da    PI: 7.7962
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMO78449genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.85e-40181191101
    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
               +C aCk+lrrkCa+dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +a+ +++yeA+ar+rdPvyG+v++i++lqqq++ l+a+l ++k++
  OMO78449  18 PCGACKFLRRKCASDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVAYLQAQLMQAKAQ 118
               7*************************99*******************************************************************999987 PP

    DUF260 101 l 101
               l
  OMO78449 119 L 119
               5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MANSSGSGST AATGTGSPCG ACKFLRRKCA SDCIFAPYFC SEQGPARFAA IHKVFGASNV  60
SKLLLHIPAH DRCEAVVTIA YEAQARIRDP VYGCVAHIFA LQQQVAYLQA QLMQAKAQLA  120
QSAMNNSHNI DNQWQGNLSG GGVPSIPSYP SYMNPISPQS SLESVEFNSS SDSMNMQDIQ  180
SRDQDHEFSF QQGYPHKKKP YNPDLGELQA LALRMMRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.15e-55LBD family protein